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Faculty

Joint Professor Yee-yung Charng
  • 發布單位:Department of Biochemical Science and Technology
Info


Joint Professor Yee-yung Charng

Yee-yung Charng

Title Research Fellow
Affiliation Agricultural Biotechnology Research Center, Academia Sinica
Education Ph.D., Dept. of Biochemistry, Michigan State Univ.
Research Expertise Protein and Gene Functions, Plant Stress Tolerance Mechanisms
LAB A540, Agricultural Technology Building, Academia Sinica
TEL +886-2-2787-2047 
E-mail yycharng@sinica.edu.tw
Personal webpage http://abrc.sinica.edu.tw/pi/?id=yycharng

Research


Plant Heat Stress Response and Thermotolerance Mechanisms

The primary interest of our research is to understand how plants cope with high-temperature stress. High-temperature stress reduces the productivity of crops, which is a big challenge to food security because of global warming. Improving the thermal adaptability of plants is essential to mitigate the problem, and identification of the significant genetic factors involved in thermal versatility will facilitate achievement of this goal.

In our lab, Arabidopsis and rice are the primary species for studying the protective roles of plant genes under various high-temperature regimes. Biochemical, molecular biological, physiological, and genetic tools are applied to decipher the underlying mechanisms of thermotolerance and regulation of heat-stress response:

I. Functional Analysis of Heat Shock Factor (HSF)– HSF is the major transcription regulator of heat stress responsive (HSR) proteins, such as heat shock proteins. In Arabidopsis, members of the HSFA1 subgroup are required for up-regulation of transcription of HSR genes in response to multiple stresses, including high temperature, salt, osmolyte, and oxidative agents. HSFA1s control the heat-induction of several important transcription factors, such as HSFA2, HSFB1, DREB2A, and bZIP28. Together, they form a complex heat stress response signaling network. We found that four HSFA1s and HSFA2 in Arabidopsis have evolved specific functions in response to different environmental factors, probably by preferentially targeting to different downstream genes.

Functional studies on HSFs "Functional studies on HSFs"

II. Modulation of Heat Acclimation Memory– Heat acclimation triggers the expression of HSR genes mediated by HSF and enhances tolerance to noxious high temperature, a phenomenon known as acquired thermotolerance. Once normal conditions are restored, acquired thermotolerance gradually disappears. We discovered two pathways that extend the effect of heat acclimation in Arabidopsis: HSFA2-mediated and HSP101-HSA32-mediated pathways.

Print

The former involves a HSFA1 and HSFA2 transcription cascade, which prolongs the transcriptional activities of HSR genes. The latter involves a positive feedback loop at post-transcriptional level between two heat-inducible proteins, HSP101 and HSA32. Our evidence suggests that HSP101 promotes the synthesis of HSA32, and HSA32 retards the degradation of HSP101, an important factor of acquired thermotolerance. Prolonging heat acclimation “memory” is likely to be an important strategy for coping with repetitive heat stress or temperature fluctuation.

Modulation of heat acclimation memory"
"Modulation of heat acclimation memory"

III. The Molecular Basis of Thermotolerance Diversity– In the natural environment, plants face different types of heat stress. For example, heat stress caused by exposure to extremely high temperature is different from that caused by prolonged moderately high temperature. Recently, we have shown that plants employ different sets of genes to overcome the challenge of four heat stress regimes, resulting in four types of thermotolerance (basal thermotolerance; short-term acquired thermotolerance; long-term acquired thermotolerance; and thermotolerance to moderately high temperature). Realizing the existence of diverse thermotolerance responses in plants facilitates studies of gene function and provides insight into thermal adaptability.

Diverse thermotolerance responses"
"Diverse thermotolerance responses"

Publications


  1. Szaker HM, Darkó É, Medzihradszky A, Janda T, Liu HC, Charng YY, Csorba T (2019) miR824/AGAMOUS-LIKE16 module integrates recurring environmental heat stress changes to fine-tune poststress development. Front Plant Sci 10:1454
  2. Liu HC, Lämke J, Lin SY, Hung MJ, Liu KM, Charng YY, Bäurle I (2018) Distinct heat shock factors and chromatin modifications mediate the organ‐autonomous transcriptional memory of heat stress. Plant J 95:401-413
  3. Rytz TC, Miller MJ, McLoughlin F, Augustine RC, Marshall RS, Juan YT, Charng YY, Scalf M, Smith LM, Dr. Vierstra RD (2018) SUMOylome profiling in Arabidopsis reveals a diverse array of nuclear targets modified by the sumo ligase SIZ1 during heat stress. Plant Cell 30:1077-1099
  4. Lin YP, Charng YY (2017) Supraoptimal activity of CHLOROPHYLL DEPHYTYLASE1 results in an increase in tocopherol level in mature Arabidopsis seeds. Plant Signal Behav e1382797
  5. Vicente J, Mendiondo GM, Movahedi M, Peirats-Llobet M, Juan YT, Shen YY, Dambire C, Smart K, Rodriguez PL, Charng YY, Gray JE, Holdsworth MJ (2017) The Cys-Arg/N-End rule pathway is a general sensor of abiotic stress in flowering plants. Curr Biol 27:3183-3190
  6. Merret R, Carpenier MC, Favory, JJ, Picart C, Descombin J, Bousquet-Antonelli C, Tillard P, Lejay L, Deragon JM, Charng YY (2017) Heat-shock protein HSP101 affects the release of ribosomal protein mRNAs for recovery after heat shock. Plant Physiol 174:1216-1225
  7. Lin YP, Wu MC, Charng YY (2016) Identification of a chlorophyll dephytylase involved in chlorophyll turnover in Arabidopsis. Plant Cell 28:2974-2990
  8. Merret R, Nagarajan VK, Carpentier MC, Park S, Favory JJ, Descombin J, Picart C, Charng YY, Green PJ, Deragon JM, Bousquet-Antonelli C (2015) Heat-induced ribosome pausing triggers mRNA co-translational decay in Arabidopsis thaliana. Nucleic Acids Res 3:4121-4132
  9. Lin YP, Lee TY, Tanaka A, Charng YY (2014) Analysis of an Arabidopsis heat-sensitive mutant reveals that chlorophyll synthase is involved in reutilization of chlorophyllide during chlorophyll turnover. Plant J 80:14-26
  10. Kuo HF, Chang TY, Chiang SF, Wang WD, Charng YY, and Chiou TJ (2014) Arabidopsis inositol pentakisphosphate 2-kinase, AtIPK1, modulates phosphate homeostasis via transcriptional regulation. Plant J 80:503-515
  11. Lin MY, Chai KH, Ko SS, Kuang LY, Lur HS, and Charng YY (2014) A positive feedback loop between HSP101 and HSA32 modulates long-term acquired thermotolerance illustrating diverse heat stress responses in rice varieties. Plant Physiol 164:2045-2053
  12. Liu HC, Charng YY (2013) Common and distinct functions of Arabidopsis class A1 and A2 heat shock factors in diverse abiotic stress responses and development. Plant Physiol 163:276-290
  13. Wu TY, Juan YT, Hsu YH, Wu SH, Liao HT, Fung RWM, Charng YY (2013) Interplay between heat shock proteins, HSP101 and HSA32, prolongs heat acclimation memory posttranscriptionally in Arabidopsis. Plant Physiol 161:2075-2084
  14. Merret R, Descombin J, Juan YT, Favory JJ, Marie-Christine Carpentier MC, Cristian Chaparro C, Charng YY, Deragon JM, Bousquet-Antonelli C (2013) XRN4 and LARP1 are required for a heat-triggered mRNA decay pathway involved in plant acclimation and survival during thermal stress. Cell Rep 5:1279-1293
  15. Hu C, Lin SY, Chi WT, Charng YY (2012) Recent gene duplication and subfunctionalization produced a mitochondrial GrpE, the nucleotide exchange factor of Hsp70 complex, specialized in thermotolerance to chronic heat stress in Arabidopsis. Plant Physiol 158:747-758
  16. Liu HC, Charng YY (2012) Acquired thermotolerance independent of heat shock factor A1 (HsfA1), the master regulator of the heat stress response. Plant Signal Behav 7:547-550
  17. Yeh CH, Kaplinsky NJ, Hu C, Charng YY (2012) Some like It hot, some like It warm: phenotyping to explore thermotolerance diversity. Plant Sci 195:10-23 (Review article)
  18. Liu HC, Liao HT, Charng YY (2011) The role of class A1 heat shock factors (HSFA1s) in response to heat and other stresses in Arabidopsis. Plant Cell Environ 34:738-751
  19. Chi WT, Fung RWM, Liu HC, Hsu CC, Charng YY (2009) Temperature-induced lipocalin is required for basal and acquired thermotolerance in Arabidopsis. Plant Cell Environ 32:917-927
  20. Charng YY, Liu HC, Liu NY, Chi WT, Wang CN, Chang SH, Wang TT (2007) A heat-inducible transcription factor, HsfA2, Is required for extension of acquired thermotolerance in Arabidopsis. Plant Physiol 143:251-262
  21. Charng YY, Liu HC, Liu NY, Hsu FC, and Ko SS (2006) Arabidopsis Hsa32, a novel heat-shock protein, is essential for acquired thermotolerance during a long recovery period after acclimation treatment. Plant Physiol 140:1297-1305

Courses Taught


  • Protein posttranslational modifications